PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01418.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 302aa    MW: 34998.9 Da    PI: 6.9404
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01418.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B389.42.9e-2820105184
                              EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                              f+kvltpsdv+k++rlv+pk++ae++   + + ++++ l ++d++g+ W++++ ++ +s++yv+tkGW +Fvk+++L+ gD++ F+
  Rsa1.0_01418.1_g00008.1  20 FDKVLTPSDVGKLNRLVIPKHHAESYfplEDN-QNGTVLEFQDRNGKMWRFRYLFWSSSQSYVMTKGWIRFVKDKNLENGDTISFH 104
                              89**************************7444.46789***********************************************9 PP

                              E CS
                       B3  84 l 84 
                              +
  Rsa1.0_01418.1_g00008.1 105 R 105
                              4 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.4E-3617112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.89E-3018105IPR015300DNA-binding pseudobarrel domain
CDDcd100172.23E-2718105No hitNo description
SMARTSM010196.9E-2220129IPR003340B3 DNA binding domain
PROSITE profilePS5086314.05720129IPR003340B3 DNA binding domain
PfamPF023622.4E-2520108IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MASGSGNNNN FNLGMGEHMF DKVLTPSDVG KLNRLVIPKH HAESYFPLED NQNGTVLEFQ  60
DRNGKMWRFR YLFWSSSQSY VMTKGWIRFV KDKNLENGDT ISFHRGYVED ENEPEKRTKK  120
LFVDWRHRAD RNLVHNINHH HHYPLFMSPT YPSADYYPLS EYSMPHYRRF PPFYHNQLQE  180
RDFLGYGYGG PYYAGAPLDH NHHYQYGRSE PLVYNSYPVY PTTRVSSSAA MVPPPQEVTA  240
KKVRLFGVDV EESASSGEAR GEMGVAGYSS SSPFVIRDEE SSSIMQLSDD EEYKRKGKSI  300
DF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-401613310122DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013722800.10.0PREDICTED: B3 domain-containing transcription factor NGA4-like
SwissprotO825951e-141NGA4_ARATH; B3 domain-containing transcription factor NGA4
TrEMBLA0A078EYG80.0A0A078EYG8_BRANA; BnaCnng01550D protein
TrEMBLA0A0D3DZU80.0A0A0D3DZU8_BRAOL; Uncharacterized protein
STRINGBra037417.1-P1e-175(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136511527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-124B3 family protein